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Hi!
I just tried to run the pipeline with profile local and singularity, with the test data `bats_mx1_small.fasta`. However GARD fails, apparently due some MPI setup stuff. I'm not sure if that sho…
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Copy/pasting from source: https://github.com/openjournals/joss-reviews/issues/5313#issuecomment-1497107263
Thanks for pointing me to the script, I was able to download the required reference files!…
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**Have you checked the FAQ? https://github.com/google/deepvariant/blob/r1.6.1/docs/FAQ.md**:
**Describe the issue:**
(A clear and concise description of what the issue is.)
Hello All,
I have…
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Hi @wheaton5
I ran the souporcell_latest.sif pipeline (using singularity) successfully for 14 of my 16 libraries. In two of them I got an error and tracked back to vartrix (in the vartrix.err). Th…
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Figured I would share this here as this might help someone down the line. I use IGV in remote cluster where X11 is not available. I resolved this by using the instructions here - http://thedusseldorfe…
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Hello Again,
I'm attempting to run EGAP on a new assembled genome and am getting a new error. Attached will be the code submitted via shell script and a portion of the slurm file output. This new g…
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### Ask away!
Hi i encountered a new error related to I/O that might be specific to my system and i wonder if you could help me out with the issue. Tried troubleshooting by changing SINGULARITY_CAC…
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### Description of the bug
The process NFCORE_CRISPRSEQ:CRISPRSEQ_SCREENING:MAGECK_FLUTEMLE starts the FluteMLE command using the data of the gene_summary.txt file. It downloads several pathway files…
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Hi,
First, thank you for the recent work on mouse brains. I'm genuinely excited about and the potential to accelerate some of our work. I have one quick question (as of right now, anyway):
In th…
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If you are interested in teaching/helping in Self-Organized Workshop(s) in Nordics, please leave a comment to this issue with the following info:
- Lesson (with URL) / as instructor or helper - *You …