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Following the install directions, I get the following when trying to do a `qiime --plugins`
```
Traceback (most recent call last):
File "/Users/constantino/miniconda2/envs/q2test/bin/qiime", line 9…
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This would speed-up the installation process.
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My attempt at making a Galaxy Interactive Environment for Phinch (and just an FYI to @bgruening @erasche)
This is just an issue to keep track of some TODOs for myself:
TODOs:
- [x] basic functionali…
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Qiime 1.9.1, as evidenced by qiime-deploy configuration file (https://github.com/qiime/qiime-deploy-conf/blob/master/qiime-1.9.1/qiime.conf), still requires the version: 7.3.0 of RAXML.
Raxml is alre…
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Affiliation_OTU raise an exception with a large Biom (96468 clusters and lot of multi-affiliations).
Affiliation_OTU version: 0.9.0
The exception:
```
Traceback (most recent call last):
File "/usr/…
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Upgrade from `biom` package to https://github.com/joey711/biomformat package to allow for biom v2 format compatibility.
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error was like:
Building CXX object cartograp...nary.dir/lua_parameter_dictionary.cc.o
FAILED: /usr/bin/c++ -O3 -DNDEBUG -isystem /usr/local/include -isystem /usr/include/eigen3 -I. -I.. -I../c…
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I'm using vsearch in dereplication mode. In my output fasta I would like to have the sequences relabeled based on their sha1, and I'd like to have a `.uc` file generated as well. This works with the f…
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Dear QIIME,
I want to install QIIME on the Linux cluster without root authority. I try to install with Anaconda2.
Following is my installing steps:
1. Download and install Anaconda2-2.4.0 on my perso…