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The Monarch knowledge graph (KG) include well-established links between phenotypes/diseases and celltypes.
Of those, 103 are phenotypes within the HPO with associations across 79 different cell type…
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## Describe the bug
I want to reproduce a local Census instance with private data. I'm following the steps of creating a new release (https://github.com/chanzuckerberg/cellxgene-census/tree/main/to…
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Add the new cell type and tissue URLs to the xml and html sitemaps
Ensure both website visitors and search engine crawlers can easily find these new URLs by incorporating them into the existing CELLx…
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## Requirements
The process:
- Should take metadata in format to be defined by @ebezzi and inject it into a SOMA Data Frame `census["census_info"][ID]`. Where `ID` is a string identifier for th…
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## Motivation
See [**#single-cell-data-wrangling**](https://czi-sci.slack.com/archives/C024HCSH9PT/p1680714440373239).
Catching datasets that will not succeed in the Discover submission pipeline bef…
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# Design
## `uns` (Dataset Metadata)
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When a dataset is uploaded, CELLxGENE Discover MUST automatically set its citation for data reuse. Curators MUST NOT annotate the following column.
…
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The validation and automation must be updated. Placeholder until schema 3.1 is published.
Current requirements are in the top-level summary comment in [Update requirements for suspension_type](https:…
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### Report
According to [this discussion](https://github.com/YoshitakaMo/localcolabfold/issues/212), `linear_util` was moved in jax 0.4.24. So trying to import pertpy with this version of jax cause…
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### Please make sure these conditions are met
- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of anndata.
- [X] (o…
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### Goal
Improve cellxgene's value proposition for researchers generating and publishing experiments that take both RNA-seq and ATAC-seq measurements from the same cells by enabling users to access b…