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A logic error on line 35 of `illumina.py` was found. Downsample options on illumina reads are only avaliable for `just-yeat-it` and does not include `yeat`.
Need to fix it to allow downsample opti…
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Create a script that merges BAM files of unaligned reads together while also presenting the opportunity to rewrite certain bits of commonly rewritten metadata, like the sample name and library IDs. Th…
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CMake Error at CMakeLists.txt:23 (find_package):
By not providing "Findfmt.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "fmt", but
…
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My name is namcheol kim.
I am going to do a LPS imputation test based on 1kgp3 panel.
My input :
sample1_R1.fastq.gz
sample2_R2.fastq.gz
Panel :
1kgp3 panel
I read this url.(https:/…
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Hi,
I get this error when running "TEMP_Absence.sh":
```
bedtools intersect -a /cluster/project/gdc/people/crimjhim/TEPID_final.bed.sort -b merged.Ma99.bam.unproper.uniq.interval.bed -f 1.0 -wo…
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Some variants only have Tier 2 reads supporting them but PASS. This results in the strange situation of having a passing somatic variant with a high EVS score in the filtered VCF file, but an allele f…
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Hi,
I started to work with your really perfect pipeline (for my work) :)
I make my own DockerFile for Unicycler. It will work perfectly and if i launch unicycler from the docker container but i…
Nilad updated
5 years ago
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As of Biopython 1.71, *Bio.SeqIO now supports reading and writing two-line-per-record FASTA files under the format name "fasta-2line", useful if you wish to work without line-wrapped sequences.*
Re…
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I'm trying to use CAMISIM to generate a big fastq file containing community reads with no error.
If I understand well, this is possible using wgsim read simulator with the option "errorfree" (I saw…
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Hi there I've been following the build from source with CMake; however, at the point in which I launch the following
> cmake ../hap.py
I'm prompted with the following error
```[ 27%] Building C…