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Hi Kamil,
First of all, thanks for developing on such a great tool.
I've been trying to run Smudgeplot on a coral genome. The species (_Tubastraea tagusensis_) was assumed to be diploid accord…
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Hello,
comparing bcftools mpileup and Clair3
Clair3 is generally much more able, especially in high heterozygosity region, but sometimes not. On the following pic, any idea why neither the pileu…
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This my command :
bismark --genome WholeGenomeFasta/ -1 CRR91_f1.fq.gz -2 CRR91_r2.fq.gz --path_to_hisat2 /public/home/software/opt/bio/software/hisat2/2.2.1/ -
-samtools_path /public/home/software/…
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**Describe the bug**
A clear and concise description of what the bug is. Please include the following in your bug report along with any explicit errors observed
* Pipeline release version: 6.0.0
* …
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Hi HAPO-G team,
Last night I started HAPO-G to polish a phased diploid genome assembly made from ONT reads with a size around 4.4 Gb using 60x Illumina short reads, just after 16 hours, it finished…
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The U.S. Cybersecurity Infrastructure Security Agency (CISA) and the FDA have issued an urgent alert about two vulnerabilities that impact Illumina's Universal Copy Service (UCS), used for DNA seque…
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Although the field experiment/platform in submission-song.rdpc-qa [sequencing_experiment schema](https://submission-song.rdpc-qa.cancercollaboratory.org/schemas/sequencing_experiment?unrenderedOnly=fa…
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hello,
I tested a NGS sample on DV1.4. An error occurred in calling a variant at a specific locus.The VCF results show that the genotype at this locus is 1/1, but the first-generation sequencing resu…
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Hi folks,
I am working through the dada2 pipeline for the first time and I cannot resolve a problem with the mergePairs step.
`mergers
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Hi,
1. When i used contigs file, no result obtained.
2. But when a subset was made and used for analysis then following result obtained.
3. But No data in warnings folder.
Pls suggest.
Thanks
…