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I had this problem today
```
2020-02-18 16:11:47 INFO: [GenomePreparation 85022035748] Simulating reads finished
2020-02-18 16:19:10 INFO: [MetagenomeSimulationPipeline] Generate gold standard asse…
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```
STUDY SRP189971_1586f07841cbf8f05e203684ee3b981b - this is an alias for the study
SAMPLE SRS4558644 - ENA sample number
RUN_REF SRR8822472 - ENA run number
ASSEMBLYNAME SRR8822472_964d7e…
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Hello,
Here I have 36 metagenomic samples, each paired-end data of sample contains ~10Gb fasta file. so I try to run Squeezemeta with the merged mode. However, error occurred at the first step, in de…
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Hi,
I am currently evaluating Bracken 2.5 and it looks very promising to improve abundance estimations from plain Kraken2 output.
Is it possible to retrieve the read names for each OTU/taxa from B…
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Hello!
PROKKA seems to have been running for over a day, and has detected a bunch of things, but there's a warning at the end of the log file. What's that all about?
Prokka for a megahit assembl…
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I am assembling Nanopore raw reads using meta mode. The metagenome size is not clear so I used 200m. And I used 8 threads. It has been running for 3 days and I keep seeing the updates in log like this…
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Hello!
I am trying to co-assemble a low-coverage genome from 3 deeply sequenced libraries, total size a bit less than 25GB.
At first I tried a simple run and it returned an error "Memory provided …
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I'm using the 0.2.7 version of your nice tool. However, the comma-separated accession list option does not seem to work. I'm getting the error message: "ERROR: No downloads matched your filter. Please…
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Hi,
I have noticed that many bacterial MAGs [generated](https://www.biorxiv.org/content/10.1101/762682v1) seem to have highly fragmented genomes (~200 contigs on average), so I am trying to implem…
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*Purpose*
Create a selection of D3 donut plots (https://github.com/mbhall88/streamformatics) adopted as Vue components in `np-core/app/app/client/src/assets/d3-taxcomp-plugin.js`.
*Link to serve…