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I am analysing a few publicly available scRNA-seq datasets. I use graph-based community detection (**kNN + Leiden**) to get clusters at different resolution values, and use these assignments as input …
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Hello, Thanks for creating this package.
In your paper, you have "Fig. 4: Copy number alterations in a primary patient sample." where Figure 4c is "Correspondence between karyotype clones from (a)…
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**Description**
Create stories for 007c Phase 2, including:
- which are MVP
- size estimate (S, M, L)
**Who the primary contacts are for this work**
Katy
**Knowledge or Stake holders**
Lesl…
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I am currently using proteomics data to study sepsis. I'm not sure if this software can be used to study the development stages of various diseases other than tumors. I would appreciate some suggestio…
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I trained a mod by using scRNA-seq with CPU mode (about 1 day). An error occurred when I try "Cell2location: spatial mapping" with CPU mode.
```python
mod.train(
max_epochs=30000,
# trai…
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I am a bit confused about the "preparation of expression matrices" section in the STAR methods of the optimal transport paper. You define three different expression matrices: the UMI matrix, the log-n…
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Hello,
I get the following error after following the manual for a single-cell dataset I'm working with.
data_obj = featureConstruct(normalized,method = "SelfProjection")
Error in cor(fpkm_for_clu…
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Hello,
I am trying to map a list of fastq files to reference mus musculus for my research. My system has 32GB ram and i7 processor. But when i start running i get the following error. I don't have an…
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Dear Omicverse Team,
First of all, I would like to extend my sincere congratulations on the amazing work you have done with Omicverse. It has been incredibly helpful for my research, and I apprecia…
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Hi, all
When I use monocle3 default parameters to `plot_cell_trajectory` , I got a not fully connected graph, as below:
![image](https://user-images.githubusercontent.com/32219336/53737415-70006980…