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trying to launch MPA on example file _testing_data_set.vcf_, but I get this:
2021-10-06 14:43:53,059 - MPA_score [ERROR] VCF not correctly annotated. See documentation and provide a well annotated …
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depending on your command line, if you use this 1000g file, then you need
to install ANNOVAR and then download this file from ANNOVAR.
On Fri, Dec 24, 2021 at 1:23 AM Nanditha-shetty ***@***.***>
…
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hi...
I downloaded the GDI_full_10282015.txt from the link "https://annovar.openbioinformatics.org/en/latest/user-guide/download/#user-contributed-datasets" and added manually to humandb folder and w…
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I am trying to annotate some variants using the `exac_03` database. I retrieved it using `download.database()`, but it retrieved the following database: `hg19_exac03.sqlite.sql`. It's now in my "annov…
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We want to create a feature comparison table of Oncotator versus other annotation tools, particularly:
- ANNOVAR
- VEP
- SNPEff
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Hi ,
I knew the bug here in 1000G dataset, but how to solve this problem in exac03 database?
Here is my command,
```
annovar-2020-06-07/table_annovar.pl \
--vcfinput decomposed.vcf \
--outfile…
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Hello,
Thanks for the great resource!
Could you provide a pre-computed PrimateAI-3D score for all possible SNVs? Or can you make it available via some annotation software like VEP or ANNOVAR..., s…
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I want to download hg19_refGeneWithVer.txt.idx.gz.
but it doesn't download
For what reason?
NOTICE: Downloading annotation database http://www.openbioinformatics.org/annovar/download/hg19_refGe…
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Dear professor,
Thanks a lot for making such a great tool.
if I want to do a cosmic file of version94
For COSMIC v91, v92 and beyond, the file formats are changed slightly. In Oct 2020 the prep…
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Hi Dr. Wang,
I need to download the hg38 version gerp++elem database, however, I cannot find it either on UCSC website or on ANNOVAR server. Do you know where I can download such hg38 version gerp+…