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Hey,
I have a problem with the consensus spectra generation. So I used the output of maracluster batch, filtered the file based on my criteria and write back a tsv file with only my remaining spect…
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I'm looking at the output from the pipeline and referring to text on the main page :
"The final cluster information is given in a tsv file final_clusters.tsv present in the specified output folder.…
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I've been using vsearch a lot recently to group sequences with `--cluster_fast`. In my specific case, I've been ending up with many singletons (10,000s at a time) that get output in the same way as ac…
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Hi,
I have run a fastq.gz sample file on NanoCLUST using following command
**nextflow run NanoCLUST/main.nf -profile conda --reads barcode01_filt.fastq.gz --db db/16S_ribosomal_RNA --tax db/taxdb/**…
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Hello, I am running ipyrad on ezrad data for assemblies of consensus sequences within a single genus. It is believed that the species are distantly divergent. I have been running denovo without a refe…
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At the very least, `DialEnv()` should be expanded to allow for multiple DSNs.
We need to work out RabbitMQ's semantics in the face of cluster splits and work out if it's feasible and suitable to h…
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`sumo run` fails with the following message when a small number of repetitions (`-n 2` in this case) is used.
```text
Traceback (most recent call last):
File "sumo/env/bin/sumo", line 11, in
…
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It appears that parsing TRANSFAC matrices does not correctly exchange the number of columns for rows (since TRASFAC is a transposed version of RSAT's internal format). Therefore, when I run `merge-mat…
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Hello Su,
I got an issue while running the code TSCAN_Clust on my data set. I get an error message (Error in svd(x, nu = 0, nv = k) : a dimension is zero). I tried both the raw data and the normal…
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Hello,
I have a recurring error for some of my samples which i cant resolve.
It looks like the majority of clusters run fine, but some have issues creating corrected_reads.correctedReads.fasta…