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In the context of nipreps/dmriprep#97, I'm trying to design a more generalizable set of heuristics when deciding the SDC estimation strategy. This is also related to nipreps/dmriprep#70.
This is li…
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Please join in developing the materials for the BHD2020 tutorial about dMRIPrep:
https://docs.google.com/document/d/16POXWYSmVw6zLwnZp6K4ZBYPQ3v1tKPOXjHT2GCEGw4/edit?usp=sharing
The idea is to f…
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Currently EPI fieldmaps are stored in the `fmap` directory. The user specifies which scans in `func` or `dwi` the fieldmaps are supposed to correct via the `IntendedFor` field in the corresponding jso…
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> Question-- do the reports need to visualize the inhomogeneity outside of the brain or do you think we should just mask it so that users don't get alarmed by the amount of out-of-brain field inhomoge…
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Idea
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Make an entrypoint called something like `qsiprep-aggregate` that grabs QC data from the qsiprep outputs from a study and creates a CSV and/or json that can be loaded in a dmriprep-view…
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Per #151 pyAFQ does not process uncompressed dwi files. However, it is quite common for preprocessing applications to store raw nii files. To facilitate should notify user what actions to take:
```…
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Update fMRIPrep's workflow graph, and upload to repo.
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Right now, if you want pyAFQ to pick up tractography that was generated through another pipeline, you would have to copy it into the folder for each subject in the right time. It would be good if the …
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Pre:
- [x] @arokem - could you generate a new recurring meeting zoom link so next time we are not cut off after 40 minutes?
- [x] @josephmje will put together a tutorial proposal for ISBI 2021 (…
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hello experts,
If I run smriprep with a docker for a subject as without a special option then the HTML report of this brain does not say anything about spatial normalization.
This is also not m…