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Hello,
I have trouble exporting the node and edge files. I assume that the node and edge tables are stored within the result network ($res_network) of each network in my DNA_network list. DNA_netwo…
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Sometimes, when the filesizes for simulations become large, the http protocol for the synapse doesn't seem to carry this information over the wire back to the vali. A result of this is that miners who…
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Hello,
when I run diamond on AA fasta files, it sometimes fails claiming there are only DNA letters even if that is not true.
Looking in the code I see this conforms with the logic.
This concerns t…
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cubism works only for time series data. Porting cubism to work with DNA data (bed files), would be beneficial for the community. In the dna branch you can find my attempts on accomplishing this. I wil…
drio updated
11 years ago
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**Describe the bug**
I have an ICGC cohort of WGS FASTQs. When run through the align-DNA pipeline they output an empty bam file with no reads. The pipeline goes through completion without any error o…
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I'm having a trouble running protect, and figuring out what exactly is failing, as the output is 4655 lines long.. I'm most probably just missing some parameters, but I'm not sure which ones exactly. …
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This question is a follow-up/bump to unresolved issue #1275 on BitBucket, which I cannot access anymore ([old link](https://bitbucket.org/snakemake/snakemake/issues/1275/ftp-remote-inputs-seem-to-slow…
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I think there a lot of confusion about what we have and what were trying to do. I am sure I am not alone in this.
We 100% have RNA data. GUAC, not ATGC. T not U.
This is very easy to verify. Op…
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Hi Jeremiah,
I wonder if you provide example BAM files and output file (.vcf) that I can test svaba and replicate the result. It is because I like to test whether I am running svaba correctly or n…
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As discussed on the forum:
https://groups.google.com/forum/#!topic/ruffus_discuss/ErfMSsKNFB4, this
parameter would specify a folder to put all intermediate/final files. Currently
it can be don…