-
#### Summary:
When calling the report for specific runs with the --run_results argument, a single value for the length of alignment is given in the alignment length column. However, the lengths of th…
-
Hi! i decided to give a try to Herro, and after repeating errors others did before me (which means a solution was out there) I found my own brand new problem... + an additional question actually...
…
-
Hello,
I am trying to use a variation genome graph to genotype SVs on more samples sequenced with short-reads, and I'm trying different avenues (see 1)graph from vcf + giraffe and 2) graph with pggb+…
-
I tried this `rna_rp4_130bps_modbases_m6a_drach_sup` model for m6a calling and aligned the basecalled reads to the reference. Seems no alignments. See the commands below:
```
/install/buttery-eel-…
-
Hi,
I am struggling to workout and estimate minimal resources to run cactus for 100 genomes mammal size.
I can use CPUs, GPUs but I need to estimate amount of resource for an amount of time (project…
-
Hi,
interesting tool.
Do you have any comments about the speed of Vacmap relative to Minimap2 and Winnowmap ? Generally Python is not the fastest language but I guess you have used optimized li…
-
Thank you for suggesting `--skip_clonalframe` in
https://github.com/bactopia/bactopia/issues/100
In [Bactopia Tools - pirate](https://bactopia.github.io/bactopia-tools/pirate/), [Input for Clona…
-
**Describe the bug**
At the moment we do not have any good GRCh37 transcript alignments RefSeq or Ensembl.
For GRCh38, we have a refseq transcript and an Ensembl. But the alignment is very differe…
-
Hi there! I executed the steps listed in the readme to create a conda environment and install RibDif2 and its dependencies, then tried to run:
ribdif -g Ruegeria
But I get the following output,…
-
### Description of the bug
When the `--sortmerna_index` flag is provided (e.g., with a directory of prebuilt rRNA indexes) along with the `--remove_ribo_rna` flag, the pipeline will do the initial t…