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Good morning,
I'd like to perform the multiple genome alignments among 9 different genomes. For some reasons, I'm getting the same error as #114, which seems to appear when aligning many genomes (iss…
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Hello,
I run STAR genomeGenerate on a cluster of 40CPUs (among 80) with 500Go of RAM available.
```
> STAR version=2.7.9a_2021-06-25
> STAR compilation time,server,dir=2021-08-05T06:34:56+…
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I have just used cactus minigraph to align 10 ~ 1.1 Gb genomes with the commands:
```
cactus-minigraph \
./jobstore \
../genome_seq_file.txt \
${prefix}.sv.gfa \
--reference $r…
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I meet a problem when using RNAEditingIndex, the log file told me that program run failed for samtools sort failed to read header from "-", This is my command with the example bam files:
`./RNAEditin…
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I'm interested in finding the location of kmer which are present twice in a genome fasta file.
I collect these kmers using kmc and transform the kmc dump to fasta before running klocate.
When I …
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Hello,
I am running Clinker on a server (installed via conda) for five genomes (from the same genus); gbk files were downloaded from GenBank. I use the following command:
`clinker ./genomes/*.gbk…
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Adding ska to our phylogenetics inference offerings would provide an alternative reference-free phylogenetics analysis tool in addition to kSNP3. It could also be used for creating whole genome alignm…
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Dear BAGA developers,
I would be happy to get support with the following problem concerning rearrangement analysis within the BAGA pipeline, installed on December 2nd from git clone http://github.…
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Dear developers,
Through the MCMC Sampling step, I obtained the file with the extension of thetaMeans, containing average relative expression of transcripts:
![image](https://github.com/user-attachm…
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Hello,
While comparing my genome alignments and transcript model, I have found out that IsoQuant 3.2.0 incorrectly assigns transcript model to annotated transcript if only 3′ end site differs.
O…