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Hi
I run into the problem as following, Can you please help with it?
```
hickit.js:457: Error: [File] Fail to open the file
file = new File(args[getopt.ind]);
^
Error: [File] Fail to…
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**Overall question**
Which software would you advise to perform differential expression analysis on the ReadCount produced by rpvg ?
**Context**
I've used the `mpmap-rpvg` pipeline to 1) map …
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As visualization is not straightforward we strongly feel that it needs prototyping. Thus, we have decided to implement it as plugin for IGV.
We need to make some architectural decisions, so we need y…
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Hi~ Thank you for this wonderful work, i would like to know about an issue i came across.
KIR3DL3, KIR3DP1, KIR2DL4, and KIR3DL2 are four frame kir genes which in principle every individual should h…
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Hello DV team, and thanks for creating such a great tool!
I am currently trying to retrain the wgs model for a new species (a fish) however, during training, I see no evaluation statistics (precis…
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The chromosome prefixes from the Arachis genome initiative are funky -- at least relative to the Data Store funk. They have the form "Gensp.[AB]*\d\d". I think this derives from our proto-yuckificatio…
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I produced nested PRGs (`--min_match_length`=7, `--max_nesting`=5) from multiple sequence alignments of plasmodium genes and found that `make_prg` can produce ambiguous PRGs.
Here's an example I…
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Hi,
I got interested in elprep5 because I have been trying GATK4 but it is taking more than five days which is ridiculous.
I wanted to ask two questions. Since I have tried GATK4 I have a sorted/mar…
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I'm getting this error when trying to run vt genotype
```
[parlar@mps 12191-96]$ vt genotype -r /home/bcbio_root/share/bcbio/genomes/Hsapiens/hg19/seq/hg19.fa -s 12191-96 -b 12191-96-ready.bam -o 121…
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Hi, I'm wondering whether we could apply IsoPhase (https://github.com/Magdoll/cDNA_Cupcake/wiki/IsoPhase:-Haplotyping-using-Iso-Seq-data) or any other methods for haplotyping using MAS-Iso-seq data.
…