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This includes:
* ENSEMBL:ENSP00000382856
* ENSEMBL:ENSP00000385720
* ENSEMBL:ENSP00000385721
* and many others
May or may not be related to https://github.com/TranslatorSRI/Babel/issues/153
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### Description of the bug
Samplesheets with more normal-samples per patient pass nf-validation, but they (probably) shouldn't.
https://nfcore.slack.com/archives/CGFUX04HZ/p1698056996871649?thread…
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There are 400 SRC proteins in the IEDB `source` table that are not in ONTIE. Of these, 189 are inactive or related, so they don't appear anywhere in the protein tree. Of the remaining 211, 73 of them …
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Dear Author,
i'm using this script for analysis:
import SEVtras
SEVtras.sEV_recognizer(
input_path='/mnt/data1/foschi',
sample_file='/mnt/data1/foschi/sample_file.txt',
out_path=…
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## Describe the issue
Some BND variants are missing vep annotations, while the rest have them.
## Additional information
### System
- VEP version: 113
- VEP Cache version: 113
### Full VEP…
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6_43519367_43519367_A_T
gets shown as None in gpsea for POLR1A
Variant Validotr (using GRCh38:6:43519367:A:T), shows
NM_203290.4:c.176A>T
BUT this is Homo sapiens RNA polymerase I and II…
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**I used following commands to prepare the reference genome**
```
rsem-prepare-reference --gtf ref/Homo_sapiens.GRCh37.69.gtf \
--bowtie2 --bowtie2-path /home/ngs/bin/bowtie2 \
ref/Homo_…
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Hi there, I am trying to test utrrates tool on my data.
I used
`alleyoop rates`
OK, and it produced boxplot as expected. The code for your reference was:
```
#!/bin/bash
module load minicon…
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prod: https://www.fuer-gesunde-familien.ch/index.php?id=30
dev: https://dev.fuer-gesunde-familien.ch/befreiung-homo-netzwerke/verdankungsseite
**Prod**
