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I think I get where the modification probabilities are coming from (ML values / 256). But if I pass a filter that's being used for both modified and canonical calls, where does the canonical base prob…
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Hello,
Does BARNABA have the ability to read modified residues. And can it calculate features of these residues like eRMSD, RMSD and gvectors? If yes, how?
Thank you,
Tia
ghost updated
4 years ago
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# Issue Report
## Please describe the issue:
I am not very technical at the command line, so please excuse me my ignorant use of terms.
When running modified base calls, the data dir argument…
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Dear Wouter,
I am interested in using Methplotlib for visualizing m6A RNA frequencies and probability output by nanocompore.
The Nanocompore SampComp function generated several files named "simu…
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You only provided the RRACH motif model file it doesn't include the DRACH motif, am I right. So if is it so then can you also included the DRACH motif in that model file then it will be more helpful t…
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Hi
exomePeak2 is so nice a better package for m6a , I installed it correctly and try to use , all bam files have been indexed. I come across the error like this :
My command is :
```
libra…
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Hi, I downloaded the respective FASTQ (SRR14765640-14765647) from Zhang et al. raw MeRIP-seq data (GSE151028) and generated the list of m6A sites using HISAT2 and MACS2 as described in the methods sec…
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i recently wanted to upgrade my version from 1.28.10 and during the upgrade some of the node are not joining the cluster
this is the error that iam seeing when i run the kops validate
V…
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Hi,
Maybe my data size is a little big. I failed in the sorting step when I run the mCaller.py. The error information is as follows:
sort: write failed: /tmp/sort7fkfH5: No space left on device
…
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The argument `predefined.p` doesn't seem to work. Notice no p-value is displayed below despite using `predefining.p`:
``` r
# modified from ?create.km.plot examples
library(BoutrosLab.plotting…