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## Version of Integron_Finder:
version 2
### OS
Linux
## Problem1: I/O overloaded for metagenomes with hundreds of thousands of contigs.
Usually, only a small subset of the contigs hav…
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Hi Luiz, Titus,
I was wondering if you could please run a Wort query across all metagenomes for the Serratus people? I seem to have understood from your talk that the best way to ask for it is thro…
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Sample along “discrete” disturbances/perturbation (oils spills, O2 excursions, hurricanes, etc..) Plankton, animal, benthic – depending on context). Viruses archaea, bacteria, protists….
Sample:
S…
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This is a list of repositories for sourmash, software for rapidly searching and analyzing genomes and metagenomes!
The main repository - [sourmash-bio/sourmash](https://github.com/sourmash-bio/sour…
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There are 14 metatranscriptome projects associated with Gs0149396. This is lower priority for GSP than processing the metagenomes b/c there are more of them.
Depends on [Add missing file_name_pattern …
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Dear @SilasK,
Thanks for hard work on the field!
I am analysing mouse metagenome dataset and trying different tools & appraoches for an exhaustive characterisation of the taxonomic composition o…
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#### Tasks
- [ ] Determine what the database queries were that people ran manually in order to provide metrics data to the leadership team for a recent report. At least some of the data pertained t…
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Hello,
It's appreciated for developing a such amazing tools, which combined reference-based and de novo assembly. It seems that MinYS was developed in the context of mining a particular symbiont geno…
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Hello Daniel,
Just want to ask whether there are plans for also implement dartminhash (https://arxiv.org/abs/2005.11547), which is very fast for sparse dataset (genomes, metagenomes), and much fast…
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I did the up date to v0.7.7 as bellow, and then tried to run metaWRAP read_qc...
Thanks for any help.
```
igor@ubuntu:~$ source activate metawrap-env
(metawrap-env) igor@ubuntu:~$ conda update -c …