-
luiz's talk about how we develop/design/evolve sourmash: https://www.youtube.com/watch?v=0jpnP8NtRfc&feature=youtu.be
-
Hello,
I've found that I was able to get TaxUMAP to work by specifying filenames to the `Taxumap` function, but providing them as dataframes didn't seem to work.
Here is a screenshot of what por…
-
I have been trying to generate an ordination plot using weighted unifrac distances calculated from CLR transformed data. I initially had this working but after our local server crashed and I lost abou…
-
-
The read_phyloseq, read_biom2phyloseq etc useq datasets from QIITA and DynamicsIBD. We had to remove these data sets from the package due to Bioc constraints for package size (4Mb). I have commented o…
-
*Please include a short description of problem here*
how to get codes for developing community modelling of probiotics in MATLAB. also how to simulate this in recon 3d ?
**I hereby confirm that I ha…
-
**What's the feature?**
In the config.yaml you have to put the absolute path of the sunbeam_config.yml
This would allow it to simply look in the directory where the config.yaml already resides
e.…
-
Hi Joey,
In post #508 above you wrote:
## How To Merge
The OTU IDs between the studies need to match up. You can use **merge_taxa** to get around this, but this is meaningful only if the taxon…
-
This will replace issue https://github.com/waldronlab/curatedMetagenomicData/issues/70
See https://github.com/waldronlab/curatedMetagenomicData/tree/legacy/vignettes/extras for code to move over.
…
-