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### Description of the bug
The pipeline may already be able to handle this, but what happens if both SE and PE are available for a particular strain? In Camilo's mixed euk dataset (**_mixed.csv_**), …
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### Operating System
Other Linux (please specify below)
### Other Linux
Ubuntu 20.04.5 LTS
### Workflow Version
v1.1.7
### Workflow Execution
EPI2ME Desktop application
### EPI2ME Version
_No…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
v1.1.1-g999fb4e
### Workflow Execution
Command line
### EPI2ME Version
_No response_
### CLI command run
…
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Hello, I would like to know whether dorado can do the adapter trimming for nanopore DNA sequence.
When I get the nanopore sequence data (.pod5), I need to do the adapter trimming, mapping and methy…
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I am attempting to manually run natrix - just wondering where I can access the example_data folder, i.e. the example_data.csv, example_data.yaml and example amplicon datatset.
Thanks!
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This is regarding _Sequence Alignment/Map Format Specification_ (2022-08-22).
§ 1.3 "The header section" lists valid values for read group platforms:
> Valid values: `CAPILLARY`, `DNBSEQ` (MGI/B…
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Hi, I have been trying to run the same pipeline for data coming from MinION and PacBIO in parallel. The analysis finishes with Nanopore data but with Pacbio there is an error. I here attache the syslo…
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
b1.1.5.
### Workflow Execution
EPI2ME Desktop application
### EPI2ME Version
v5.1.9.
### CLI command run
…
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### Operating System
Windows 11
### Other Linux
_No response_
### Workflow Version
v2.6.1
### Workflow Execution
EPI2ME Desktop application
### EPI2ME Version
v5.1.9
### CLI command run
_No…
irc47 updated
4 weeks ago
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Hi,
I'm curious if it's possible to run npScarf with ONT reads aligned to a reference genome (consisting of unique contigs). I've aligned the long reads with `minimap2` to generate an indexed and s…