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### Description of the bug
The pipeline works when supplying SRA run IDs (SRR***), but fails with corresponding Biosample IDs (SAMN***).
For instance, the following works:
```
echo 'SRR9041539…
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update email and info for Todd at FDA
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[ Code Table Documentation is https://handbook.arctosdb.org/how_to/How-to-Use-Code-Tables.html ]
**Goal**
Make it possible to find genomes through a search of OtherIDs = Genome ID
**Context**
…
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Add a slot called `ncbi_taxon_id` to capture the host taxonomy ID as present in GOLD, and other sources possibly.
For example, let's look at `Gb0291745` on the GOLD website: https://gold.jgi.doe.go…
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@sg134 Can you help to explore sequences -> enhancer models?
We can use these enhancer classifiers as orthogonal metrics to evaluate our synthetic sequences.
Probably we can find tons of these clas…
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Hey,
Nice and useful tool! I am trying it to access metadata based on BioSample number (unfortunately the info I am interested in can only be found on BioSample entry, and not ERS, ERR...) and it r…
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Version: 2.11.3 and 3.0.0
OS: Centos 7
Description:
When using `prefetch` to retrieve SRR related to biosamples GSM5553306, under GEO: GSE183206, `prefetch` fails to pull all child SRRs.
`pref…
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When I imported an expression matrix, the column headers represented the NCBI SRA Experiment IDs (e.g., SRX, ERX, DRX accessions). I have my BioSamples imported using the name from the NCBI BioSamp…
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Goal: use script output to create a table like this: https://docs.google.com/spreadsheets/d/1wkoN9fyUtVZWYnbK0S0AKJmiTS-yELCRKgkNqk870eA/edit#gid=1729887084
helpful info from Karl:
the "label" l…
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Using the code in PR #382 I am able to see the CV term configuration section as expected (previously I wasn't). However, the following lines of code create problems:
https://github.com/tripal/trip…