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XEC has two main branches one defined by Orf1a:A599T the other defined by Orf1a:I1367L that is convergent with Kp.3.3.4
Defining mutations: XEC > Orf1a:I1367L (A4364C)
Query: C19716T, C25006T,A43…
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(Not sure if this is the right issue tracker for this, so please direct me to the right place if not)
Currently, the a large number of sequences that Pangolin 4.05 (data 1.3, --skip-scorpio) classi…
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谱系|时间|谱系|时间|谱系|时间
-- | -- | -- | -- | -- | --
BA.2.2.1 | 2022-06-13 | BF.7.14(BA.5.2.1.7.14) | 2023-01-06 | BA.5.2.48 | 2023-01-06
BA.5.2.49 | 2023-01-09 | BA.5.1.32 | 2023-01-15 | BA.5.2.…
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Only SARS-CoV-2 has pango lineages per se, there's something a bit like pango for mpox, and similar (but different) systems for flu, rsv etc
Is the lineage config field required? That would not mak…
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Whenever I run Usher placements I notice that the Usher pango assignments are not only more up to date (they don't need to wait for PangoLEARN release) but also more reliable (at least that's what it …
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It seems that like S:S31del, there is also lots of S:F32del branches emerging.
As it is basically having similar function as S:S31del, DeFLiRT/DeFLuQE still works.
```[tasklist]
### Tasks
-…
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There is another LB.1 sublineage different from LB.1.9 that got the uptrending S:K478T reversion.
In addition it has S:E96V that has been sampled 1500 times in the course of the pandemic mostly in a …
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From Slack:
> I was worried that the new ARG construction procedure was creating larger polytomies than before (which could explain why we are tracing recombinants back to MRCAs at only 2 timepoint…
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Hi,
We have some questions regarding the result of Pango Lineage from https://pangolin.cog-uk.io/.
1) For some samples, Pangolin web generates a conflict:
**Lineage - Note**
BA.2 - …
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Just spotted this recent branch of XDV.1 with trending mutation S:T22N: being caught in two different countries better tracking it here:
XDV.1.7 [C8950T > Orf1a:D2980N (G9203A)] >> C5173T > Orf1a:L68…