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Hello,
I have been trying to run prepPed with my pedigree
_ped
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Can use a directed acyclic graph to keep track of parents, progeny and extract families. Can also use a graph data structure to calculate inbreeding coefficients from pedigrees.
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Hello Brent!
Thank you for creating jigv, it looks promising.
I work with normal-tumor matched samples as well as samples collected over time and it would be great to see them together. I belie…
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In the [intro part of the documentation](https://pyslim.readthedocs.io/en/latest/introduction.html), lots of the explanation about removing individuals discusses the ~~pedigree~~genealogy. But I usual…
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Hi, kai,
I'm a little confused here, if I have pedigrees and signal intensity files for each sample to test for CNV, and the individual's parents don't have signal intensity files, does that mean I…
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- whatshap (v2.2), python (v3.10)
- conda create -n DEEMPRINT_whatshap whatshap
----------------------------------------------------------------------------
```
rule wh_phase:
conda:
…
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At the moment, much of the detail is described in https://tskit.dev/msprime/docs/stable/pedigrees.html#pedigree-encoding. I think some of this is general to `tskit` rather than `msprime`, and so a sho…
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From Veronica's todo document:
> • Add total individuals to ped ascertainment summary view, and sort by # affecteds
> o Confirm people outside the cohort are included
> o Confirm total individual…
Viqsi updated
4 months ago
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In the Pedigree chart of webtrees 2.1 the text does not fit within the frames:
![afbeelding](https://user-images.githubusercontent.com/46184729/164392015-6abb018f-c436-4f12-b40e-dfa5afbfb5c9.png)
…
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I've already simulated 22 autosomes for ~1.5M samples using the [`FixedPedigree`](https://tskit.dev/msprime/docs/latest/api.html#msprime.FixedPedigree) model and I'm wondering about how much work migh…