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**Description**
**Sub-lineage of:** BA.2
**Earliest sequence:** 2023-7-24, Denmark
**Most recent sequence:** 2023-7-31; Denmark & Israel
**Countries circulating:** Denmark (2), Israel
**Number of…
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@stamatak I want to compare the placement with the reference tree. But I have no idea about how to convert the format to the newick? Looking forward to your reply!
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I have obtained hundreds of promising NCLDV genomes from the Lake Cadagno metagenomics dataset. However, I am struggling in assigning taxonomy to them. There are missing names in the "spreadsheet of …
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You write:
A taxonomic concept is a taxonomic name instance establishing or circumscribing a taxonomic entity - often linking synonymic inclusions and adding annotations, description…
I think it'…
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*************edited November 20***************
**TRACKER**
BA.2.86: -C6541T,A7842, C8293T, G8393A (new query thx to @aviczhl2 )
JN.1 QUERY: C18894T, T15756A, A7842, -C6541T
XDD Query : C6541T…
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@dinaramamatova
Compare new and old Stan code for the PMM:
https://github.com/lizzieinvancouver/pmm/blob/master/analyses/stan/ubermini_2.stan is the original code that I got running long ago. Y…
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Is it correct that `place_seqs.py` for the fungal data in `/picrust2/default_files/fungi/fungi_18S` and `picrust2/default_files/fungi/fungi_ITS` only works with `--placement_tool epa-ng`?
Wonderin…
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Hi!
I got this error when running:
epa-ng
-t reference_tree.raxml.bestTree
-s reference_aligment.fasta
-q query.fasta
-w ./ --model reference_tree.raxml.bestModel
Please find …
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```
$ CTEST_OUTPUT_ON_FAILURE=1 make test
===> Testing for hyphy-2.5.42
Set default compiler flags to -fsigned-char -O3 -msse3
/usr/local/lib/libcurl.so
Node not installed; API documentation w…
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Matthijs Welkers kindly reported that our docs still contain links to Github release assets based on v1 binary names.
It would be great if we could sift through docs and replace things
Example:
…