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usearch is frequently used for chimera checking, but due to the RAM limitation, only small data sets can be assessed, or else the data needs to be broken up into subsearches (my current approach). vs…
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I recently updated my conda env (see below), which broke the R function `cmdscale()` for for larger distance matrices. If I provide a distance matrix larger than the lower triangle of a 200 x 200 matr…
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Dear Hi-Fi Team,
My group first used your pipeline about a year ago for some skin samples, and we got it to work after a bit of effort as an LSF submission on our HPC. We have new skin samples now …
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Hello,
I am trying to install CApy into my conda environment and am running into issues.
Install command:
`python setup.py install`
Command output:
```
running install
/scratch/grc_g…
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Hi, I'm using ITSxpress for the first time and I'm running into an error that states "FASTQ input is only allowed with the fastx_uniques command". I'm supplying a FASTQ file, but the sequences are wri…
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### Package Name
MACS2
### Hub URL
biology.datahub.berkeley.edu
### Course Name
MCELLBI201B
### Semester Details
Fall 2024
### Installation Deadline
09/09
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Hello
I am trying to install empress into qiime2 2021.11 on Windows 10 WSL (Ubuntu 20.04.3 LTS (GNU/Linux 5.10.60.1-microsoft-standard-WSL2 x86_64)), versions attached. I have attached a copy of th…
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### Describe the issue:
The result of `sum(some_array)` in NumPy 2.0 can differ from the 1.x series, and result in an overflow error. I suspect this is related to the type promotion changes with NE…
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Hello,
I'm trying to run NanoCLUST with my 16S sequence data. I run it on a Linux CentOS 7 machine.
Also with the test data I get an error reaching the 'consensus_classification' module:
When I u…
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**Bug Description**
A metadata subcategory called `HF+` caused the generated .pdf and png files within the .qzv file to have different names, breaking the embedded figure and link on view.qiime2.org.…