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Hello,
I was wondering if you can provide some detail on how category 1 (has 5' UTR) and category 2 (no 5' UTR) transcripts are determined. Is this based on blastn results or is this information de…
fw262 updated
7 months ago
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**What do you want to know?**
I've meet the same problem as #106 when I try to run RepeatModeler and fixed it as the suggestion of @jebrosen , by relocate the RepeatMaster to the folder downloaded …
BRNiu updated
2 years ago
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Hi Team,
I noticed that there is a huge differences between rmsk.bigBed and GCF_009914755.1_T2T-CHM13v2.0_rm.out as shown below:
5,586,304 rmsk.bed (converted from rmsk.bigBed using bigBedTob…
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I am running RepeatMasker with a custom library using the following command:
```
RepeatMasker -pa 30 genome.fasta -lib custom_library.fasta -dir . -xsmall -e ncbi -no_is
```
- Genome size: ~4.2 Gb…
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As suggested by Dr. Martin Hemberg following our recent email correspondence, I’d like to summarize some issues I encountered with TransposonUltimate (ReasonaTE and RFSB). I fully recognize and apprec…
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Hello!
I faced with the following problem: applying of **Unmasked_seq_to_masked_seq.pl** at 12th step gives incorrect output #4: **${SAMPLE_ID}.RepeatMasker.goodSeq.RefGenome.unmapped.masked.fasta*…
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Run EG pipeline DNAFeatures_conf to repeatMask NAM genomes and load the repeat features to their core databases.
In 2019, We ran DNAFeatures pipeline to load repeat features to core dbs for 10 NAM…
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**Describe the issue**
I am running RepeatModeler using the university cluster with my fungal genome (~46 MB). I used the following syntax below. It completed 2 rounds and still running. How lon…
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**Are you using the latest release?**
yes, 1.8.8.
**Describe the bug**
At the moment, `funannotate mask` does not seem to support RepeatModeler 2.x. This is because the `RepeatModeler -e` option …
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The idea is to collect as many annotations as possible and put then into a data store, like sqlite. Answering questions and querying should be separate tools on-top of this storage. Pretty much like […