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Hi, I have finished the converting of ADNI database and I have two questions about the clinical information extraction.
1. In the participants.tsv file located in the BIDS dir, what does the column…
fyb99 updated
10 hours ago
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Hi, Laurie
thanks for your great efforts on such a remarkable software on compative genomics. Recently I found that in some HOGs of N0, only 1 gene was found, which makes it not proper to call i…
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@shirey A data provider reported to me that they are having trouble bulk submitting suspension metadata on Ingest UI. A validated .TSV containing the metadata can be found here:
[validated-HuBMAP-Su…
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### Is your feature related to a problem?
The final report provides a nice summary of the run, however it would be great to have all those files that the report is based on (e.g., "itr_coverage_trimm…
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This is a twin for
- #80
which is IMHO more obvious/easier to address. Relates to
- #85
in a step towards unification.
Should be easy to automatically migrate on BIDS 1 -to- 2.
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e.g.
```
#notetype:Chinese
Hanzi eng pinyin
```
to the top of the tsv file. Note this still depends on the user having a "Chinese" note type, so we will need to investigate how to create suc…
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Tokens to align:
```bash
$ grep ps2013-001-01-002-002.u1.p5.s1.w18 /net/work/people/kopp/ParCzech/audio-alignment/Data/audio-corresp-tsv-in/www.psp.cz/eknih/2013ps/audio/2013/11/25/2013112513581412.…
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https://github.com/michaelwitting/RepoRT/blob/713272555428663cf8de4a2e93b0accb0f3c55f1/raw_data/0260/0260_metadata.yaml#L7
The associated tsv file has to be corrected as well.
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Here are the links to TSV dumps (nodes and edges) for the Drug Approvals KP. URLs provided by @amykglen :
nodes: `https://db.systemsbiology.net/gestalt/KG/drug_approvals_kg_nodes_v0.3.3.tsv`
ed…
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### Installation Type
Docker
### pVACtools Version / Docker Image
Docker container, version 4.4.1
### Python Version
_No response_
### Operating System
_No response_
### Descri…