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Hey Pierre and Donovan,
Our lab has submitted MAGs to ENA in the past, and we have found that one of our favourites is not in release89 - though it was submitted in 07/2018.
https://www.ncbi.nl…
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I noticed that, contrary to your [documentation](https://github.com/ncbi/pgap/wiki/Input-Files#metadata-yaml-file-submol), `middle_initial` in `contact_info` leads to a crash.
```
$ ./pgap.py -n -…
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Hi there,
We've been having some trouble getting properly formatted paired-end fastq files from a set of (large) accessions. I think I figured out the problem, and would like to suggest an enhance…
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Once we get JBrowse up and running we should make this one of the first datasets to host as we will need it to refine gene structures as proposed:
https://github.com/pombase/curation/issues/633
…
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This might go in the cookbook, or perhaps it's long enough to be its own guide. It would cover how to upload de-multiplexed FASTQ files, BAM files, and de novo genomes to the NCBI SRA.
Some thought…
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The link "Genbank/ENA Workflow", to the file iarc_submission_ncbi.rst with submission instructions, is broken.
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(Tripal v3 module)
Hello,
In the biomaterial loader, we can load both flat file and xml files.
In the XML files, we can use BioSample accession, and SRA accession.
In the flat file, we can l…
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Hi,
I think I maybe catched up a problem.
I got this error message: **ERROR: Abutting features cannot be adjacent between neighbouring exons.**
But the exons come from two different genes. S…
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To be brief, `DBxref` is not the same thing as `Dbxref` according to the GFF3 spec: https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md#ontology-associations-and-db-cross-refer…
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Extracting @biswapriyamisra's comment from #12:
> [1] I would need a "overview short caption" and a "semi-descriptive
caption" for the entire Figure. If you want to have 2/3 Figures (Each
figure …