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Hello,
`rtracklayer` has been great for importing various supplementary files from GEO. However, I've run into the following error when trying to import certain bigWig files.
A couple of notes…
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The code is quite full of
```
stop("No significant signaling interactions are inferred based on the input!")
```
in case that no results are present. This is very detrimental to any workflow.…
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Hello. I have a problem to install the 'ensembldb' package on my R studio, based on my Mac M1. However, I get several errors.
Error:
"cram/cram_io.c:61:10: fatal error: 'lzma.h' file not found
…
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Hi everyone
I'm working with cibersort in R, i downloaded this database from pubmed GSE33814, after some cleaning process I got the matrix with gene names as row names and patients as columms. but …
ghost updated
2 years ago
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Hi @timoast,
I am running into an issue I have seen on here, but cannot seem to identify a solution. I am currently trying to analyze an snATAC dataset from zebrafish. While running AddMotifs, I …
t-and updated
2 years ago
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Some formats of sparse matrix are causing massive allocation of memory. dgCMatrix works perfectly, using only a total of 2MB:
```
> library(scran)
> library(lineprof)
>
> nrow = …
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I receive the following error when running the bcbio RNAseq pipeline. It appears to be a R package version conflict but I'm not sure how to resolve it. Thanks in advance for any advice.
```
[202…
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Hello,
I am trying to load an h5Ad file from scanpy v 1.4.6 to Seurat using Seurat disk. I did the following steps:
1. Convert scanpy to seurat
```
Convert(
source=scanpy_src,
des…
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When I was running `export2scope` function to create a loom file as the tutorial says, I got an error:
```{r}
Error in file.exists(fileName) : invalid 'file' argument
```
Then I check the source c…
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Hello thanks for the tool.
When I run liger through SeuratWrappers regressing for (i) total reads per cell and (ii) mitochondrial percent I get a stringy UMAP plot. While I get a more normal lookin…