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Hi!
I have an inDrops dataset to preprocess and I am trying to run it using the recent bustools for scRNAseq. Unlike 10xGenomics, InDrops library V3 provides two list of barcodes - [inDrops barcode…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
>>> import sys; print(sys.version)
3.7.6 | packaged by conda-forge | (def…
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Hi,
I want to what the option "-m /example_data/splatter_data_100_Cells_50K_Genes_pbmc/" means? I cannot find the explanation on this option. And how can i generate myself splatter_data_100_Cells_5…
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As I've found out, all R1 sequences must be of the same length. R2 too. Is it necessary to have sequences in R2 files synchonized with sequences in R1 file (same number and order)? If I trim all R1 fi…
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Hi Richard,
You mentioned in one of your answer that it is possible to split the gene models created from adjacent, slightly overlapping transcripts. Can you explain it in a more detail? I am really …
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We have observed a base shift in an alignment that is copied from the reference alignment. It only affects three bases in the alignment positions 22045 to 22050 but it is still strange as SINA says th…
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Some annotation tools provide multiple VDJ calls. How does the Stats API handle this?
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Okay, so this might be beacuse my database is a bit noisy, but I am a plant person and I have no choice. I am using this database:
http://its2.bioapps.biozentrum.uni-wuerzburg.de/
I am getting a …
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Thanks for publishing the Biopython project, my team has found it very useful.
### Setup
I am reporting a problem with Biopython 1.76, Python 3.6.9, PyTest 5.32, and Ubuntu 18.04 as follows:
…
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A recent change to the pathways2go conversion ended up producing some models that have multiple BP part_of BP links. (See pic below). These links reflect the reactome pathway part_of hierarchy. The…
goodb updated
4 years ago