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From branch 86 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1+C17119T+A2251G+S:F456L(T22930A)
Query: T22930A, C17119T, A2251G
No. of seqs: 21 (South Korea 20 USA 1)
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I have certain coordinates that I would like to map in T2T, but from what I know is that it is still not available a version in ideogram for T2T
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I am trying to run this script but it keeps returning with this
"The genomes.instruction file has been updated with 0 genome(s) taxonomy indications, using '.fasta' extension"
Could you please tel…
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Hi,
Thank you for this great and simple tool!
I'm working with non-human data that which we have found many TAD callers seem to have a high false positive rate on - judging from how it adds up …
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Hi, I am experiencing the same issue as Saya #257
I ran the command:
```
perl vcf2maf.pl --input-vcf input.vcf --output-maf output.maf --ref-fasta /home/usr/Documents/Genomes/NCBI_RefSeq_GRCh38/…
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Hello,
I am getting an empty CDS file from running gff2seq with no error message.
My command is `anchorwave gff2seq -i GCF_003119195.2_ASM311919v2_genomic.gff -r GCF_003119195.2_ASM311919v2_genom…
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We sequenced and assembled the chromosomal level genomes of two Malus crabapple cultivars, 'Flame' and 'Royalty'. How to enable HSE to include and search these two genomes?
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**Current Behavior**
There appears to be missing lineages from the https://github.com/corneliusroemer/pango-sequences/blob/main/data/pango-consensus-sequences_genome-nuc.fasta.zst file that are pre…
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The reason why I'm asking is because VirFinder, geNomad, VirSorter(2), etc. operate on individual contigs then those results are usually fed into CheckV to determine how complete/contaminated the viru…
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Add papers about plant genome size as responses to this issue!