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**Background**:
- cBioPortal: [cBioPortal](https://github.com/cBioPortal/GSoC/issues/www.cbioportal.org) is an open-source platform for cancer genomics data analysis and visualization. It provides a…
inodb updated
8 months ago
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Currently every iteration of pcalf-dataset re-download all the genomes required. Which can add up pretty quickly in terms of space.
A solution could be to add to the pcalf-dataset an option to allow …
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@FlorianTrigodet and I have noticed several common issues emerging from recent Discord questions. These are not really bugs, but quirks of the anvi'o ecosystem that are not obvious to beginners. Many …
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Hello
Could you please help me to run your pipeline? I only have one gene that I would like to find its orthologs in 136 sequenced plant genomes.
Do I need to download the sequenced genomes (in …
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Hi,
for diploid genome, findGSE(histo="Cfl.histo", sizek=21, outdir="hom_test_21mer62", exp_hom = 62), which following number is haploid genome size?
size_all 2831278311
size_exl 2762932750
si…
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While running `sos run pipeline/reference_data.ipynb download_hg_reference --cwd reference_data` in the login node, following error occurs.
```
hs3163@csglogin:/mnt/vast/hpc/csg/xqtl_workflow_test…
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We’ve been getting some odd results in a single cell study and tracked these down to a set of genes which had odd clusters of mapped regions over only part of one exon of the gene.
When we looked at …
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Hi!
I'm working with illumina data PE reads of 151 bp of a repeat-rich maize genome (diploid).
The genome size estimate is 2.3 Gb (maize B73v4).
I used the following command in Jellyfish:
```
…
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Thanks for the `heasoft` package, it save me 3 hours!
This is a package request that we can add astronomy packages like `IRAF` `TOPCAT` `SAOImageDS9`