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Hi,
I am trying to analyze some newly generated scATAC data from Illumina and may have more than 20,000 cells which cellranger-atac count is unable to properly analyze. I would like to use the defaul…
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After preparing the required input, the pipeline can't seem to find the specified files or output directory. I don't see in the log files whether or not my sample file is recognized. I am hoping that…
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Good Afternoon,
I am attempting to use pre.py to normalize VCFs. However, I am getting the following errors with this command. I have tried this on a few different VCFs from different sources
``…
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I am assembling a chromosome out of a plant genome (Illumina data). But the server I use only allows me to run at most one-week per request. Is there any kind of "pause and resume" ability from MaSuRC…
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We are not able to initialize wncountering below error.
We tried to:-
1. delete the lock file
2. replace the expected checksum
3. tried to reinstall terraform
4. tried terraform providers lock…
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I installed SNPBac in a conda environment built in python 2.7 and installed all other dependencies as one conda build. (Gubbins would not install with error stating that I am not using the right conda…
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I'm using the `funannotate` pipeline and it fails during the `augustus` step. I found which command it was running and tried running it outside of `funannotate` and got the following error. How do I…
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Hi, may I ask if it is normal (correct) to detect different adaptors sequence in the paired reads? (attached a picture with the example)
Thanks for your help!
[fastp.pdf](https://github.com/OpenGene…
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Hi! I´m trying to run Masurca with Nanopore and Illumina PE reads. The program started correctly, but after a short time I get this error massage:
“error reading mega-reads file at /opt/Masurca/MaS…
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Hi, I am trying to use Nanopore and some illumina reads from SRA database, I provided the fastq file from SRA its not working with the file, is there any way that can i use the fastq downloaded file f…