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Hi there,
I have been trying to run Canu 2.1.1 on some nanopore long reads using the script:
```
load_canu
canu gridOptions="-p safs" minThreads=48 -d /safs-data01/uqkweigh/long-read-assemblie…
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Hi everybody im new in bioinformatics im learning by myself , and Im analysing metagenome set (microbiota data from children) Im following the Asaim workflow, and I was wondering if SortMeRna works wi…
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Hello,
I was following your tutorial for MAGs and wanted to use MAGs to assess similarity of two metagenomes. I ran dRep compare and have subsetted the comparisons to those with popANI greater than…
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Hello,
I have trying out VIBRANT lately and although I find it is superbly made, I have run into a couple of issues regarding prophage identification. As a test, I have input the whole genomes from…
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Hello,
Congratulations on the recent publication! This seems like a very useful and much needed tool in the field of metagenomics. After a quick reading the pub I just have a couple of questions:
…
MrOlm updated
3 years ago
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create a small test data set with expected outcome if workflow run is successful
link test results to this issue
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I am trying to run InterProScan on pooled metagenome assemblies but am running into some issues.
**Version**
v5.50-84.0
*The environment*:
We use environment modules
2) anaconda3/4.4.0 3) …
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Hi, I am using metaquast for metagenome assembly evaluation, but find a confusing NGA50/NG50 value. The confusing point is that Genome fraction (%)=39.9, which is less than 50%, but NGA50=5456, to my …
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Thanks for the nice tool! Does this one also work for the complete nifH sequences that annotated from e.g. metagenomes?
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**Is your feature request related to a problem? Please describe.**
Given the rising increase in microbiome studies, it might be good to include an additional QC step for deeper sequencing calculation…