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Hi,
thank you for your good job! When I run :
`(venv3) (base) ./eel -g /home/ashui/Downloads/ont-guppy_6.4.2/bin --config ../rna_r9.4.1_70bps_hac.cfg --device cuda:all -i nt/data/home/malab…
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Dear developers,
We have developed our own Nanopore protocol which involves custom barcode sequences. They are longer and differ from the Oxford Nanopore official barcodes.
We are starting to use Do…
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Hi again!
I was trying to use Methplotlib to see if I can plot my Megalodon data for 6mA and 5mC. Simply converting my sorted BAM output using samtools to CRAM format and using that as an input is …
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Hi,
I found this post a bit randomly but I found it quite interesting. I'd suggest adding [Spring](https://github.com/shubhamchandak94/Spring) if there is a plan to make another iteration in the fu…
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Dear developers,
I would like to correct/break a scaffold after running ragtag with nanopore long reads. I have installed LongStitch and dependencies with mamba.
This is my input directory
```
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Dear nanopore devs,
I'm having issues getting mini_assemble to run on human (HG001/NA12978) data. I've successfully ran it on smaller assemblies before, but a ~30x human genome seems to be causing …
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Hi
as you already know CutAdapt can detect and trim adapter/barcodes in the middle of a read (anchored 3` or 5`). we are working with data from Oxford nanopre technology and we have lots of reads …
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Hi, thanks for your continued work on Rcorrector. I am having an issue using the tool on my FASTQ sample. At first I thought it was potentially due to multiple threads/processes writing to the output …
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Hi, NanoPlot 1.38.0 encounter new error! how to solve it ?
running logs as below：
2021-06-15 18:51:24,384 NanoPlot 1.38.0 started with arguments Namespace(N50=True, alength=False, bam=None, bar…
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# Issue Report
## Please describe the issue:
Dear dorado team,
I have a snakemake pipeline that wraps dorado basecaller, demux and aligner.
I was fearing when I saw this in the release not…