mourisl Rcorrector issues

mourisl / Rcorrector

Error correction for Illumina RNA-seq reads

GNU General Public License v3.0

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issues

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Rcorrector produces malformed corrected FASTQ file

#41 patrickaoude closed 1 month ago
2
Feature Request: Argument for controlling where temporary files are written

#40 gladshire closed 6 months ago
4
Encountering Failed at Stage 1 error

#39 ablanchette23 closed 9 months ago
2
-stdout only printing forward reads?

#38 gladshire closed 1 year ago
3
Really correcting bases??

#37 rafaeltiveron opened 1 year ago
2
Fix a potential buffer overflow error

#36 raymond-u closed 2 years ago
1
Encountering 'Failed at Stage 3' Error

#35 aseyedia closed 1 month ago
4
The -trim option

#34 StevenWingett closed 2 years ago
2
(Also)Bad quality threshold is ','

#33 appleapplehan closed 2 years ago
0
jellyfish error

#32 ghost closed 3 years ago
3
No obvious reason why it failed at stage 3

#31 jychoilab closed 3 years ago
7
Unknown argument: tmp_4f2df974fb738950aa484018d9409e8f.jf_dump

#30 chenyanniii closed 3 years ago
3
Question about k-mer level threshold

#29 mtmcgowan closed 3 years ago
3
If run on more than one thread, rcorrector hangs after doing its job (and sometimes before)

#28 margoleb opened 3 years ago
1
Restart at stage 3

#27 joannarifkin closed 3 years ago
5
rm: cannot remove file, no such file or directory--is this an error?

#26 peanut-buddy closed 3 years ago
4
Update Jellyfish to version 2.3.0

#25 karolisr closed 4 years ago
1
(Also) Fails at Stage 3

#24 jrede closed 4 years ago
2
quits with a large file

#23 swollen closed 3 years ago
0
more reads after correction?

#22 smallfishcui closed 4 years ago
2
Running jellyfish2

#21 000generic closed 4 years ago
2
make fatal error: no zlib.h

#20 e1992 closed 3 years ago
1
Rcorrector dropping reads? (again?)

#19 angelaparodymerino opened 4 years ago
7
Rcorrector speed optimization

#18 sagnikbanerjee15 opened 4 years ago
3
No errors but no outputs?

#17 angelaparodymerino closed 4 years ago
3
Feature request: print version information

#16 karolisr closed 4 years ago
1
Feature request: Remove unfixable reads

#15 Shellfishgene opened 5 years ago
4
Bad quality threshold is "("

#14 mdgn15 closed 5 years ago
6
Suggestion: not discard unpaired and unfixable in filter script

#13 sandbardev closed 5 years ago
2
Rcorrector dropping reads?

#12 macmanes closed 6 years ago
5
Correctly print out bad quality threshold (Closes: #10)

#11 moskalenko opened 6 years ago
0
'Bad quality threshold is !'

#10 moskalenko opened 6 years ago
1
Fails at stage 3

#9 StoltzfusJ closed 6 years ago
7
unable to find/install prerequisite modules

#8 minor7b5 closed 6 years ago
4
Usage calls the binary 'a.out'

#7 tseemann closed 8 years ago
1
Drop bundled jellyfish-2.1.3.tar.gz copy from GIT tree

#6 mmokrejs closed 6 years ago
1
handle the -od option for the output directory

#5 cboursnell closed 8 years ago
1
Set destination output directory

#4 cboursnell closed 8 years ago
2
write corrected reads to stdout

#3 macmanes closed 6 years ago
1
accept streaming interleaved reads

#2 macmanes opened 8 years ago
1
cannot make

#1 macmanes closed 9 years ago
2