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Hi I am trying to run SNPsplit on F1 hybrid mice single cell RNA-seq data. For our scRNAseq data, one read only has barcode information, one read has real sequence information used for alignment. See …
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Hi there!
I have used fetchngs with no problems for downloading RNAseq data from SRA. However, when I tried the same with scRNAseq data from SRA. The pipeline ended saying "Pipeline completed succe…
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I am performing routine scRNAseq analysis on a single cell dataset using the scTransform framework. and have run into a weird issue. Briefly, running the code below exactly reproduces the results of …
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Hello DeweyLab,
I am working with a dataset of ~22k cells and ~22k genes, and after generating a model with cello.scanpy_cello(), I keep getting an error when transforming with PCA:
Transforming…
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Hello,
Thanks for creating this innovative tool, I think this addresses a significant gap in the spatial omics space.
I am using this approach to match data from spatial imaging (54 proteins) …
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https://mp.weixin.qq.com/s/ZNy1F5mYK9hEbMznazjEEw
ixxmu updated
8 months ago
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https://mp.weixin.qq.com/s/ZNy1F5mYK9hEbMznazjEEw
ixxmu updated
8 months ago
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**Is your feature request related to a problem? Please describe.**
End users (with no coding capability) would like to choose the colors before they start the app. I wrote some shiny elements to let …
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**Loading PanglaoDB Error**
When I try to run dc.get_resource('PanglaoDB').
I get this error message: read_csv() got an unexpected keyword argument 'squeeze'
Here is the trace:
TypeError …