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Hello, I am new at using the HTMD for simulations, I submitted an adaptive sampling simulation using HTMD, however my job has been on queue for the past 3days now and not running, although it was runn…
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Hi,
I have experienced the same problem as described here #2212.
I'm using toil 3.18.0 (released on October 2nd) for launching a tool call `cactus`. I have open an issue in their repo (https://github…
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there is an error when I running the shovill, anybody could gimme a help?
Read stats: max_len = 100
Read stats: avg_len = 100
Read stats: total_bp = 1200311600
Read stats: min_len = 100
Estimatin…
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Greetings,
I am trying to run the distributed version of the PPO baselines training on a cluster that has SGE instead of SLURM, so the included script cannot be used.
I tried replacing `srun` wi…
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I guess there isn't a way to enable clusters for all users on jupyterhub?
Current users see this:
![screenshot from 2016-07-14 11 00 08](https://cloud.githubusercontent.com/assets/168568/16844194/2b…
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Hi I am using HiC-Pro parallel on SGE cluster. Usually it requires loading modules at job submission. For example, in HiC- Pro specifically, I have to add "module load python/2.7" to HiCPro_step1.sh a…
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**Describe the issue**
Some runs are reporting that it failed to publish the output files from /scratch while saying the job has completed/succeeded. The log files for the delly tool look like all th…
tgebo updated
3 years ago
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@drvadim reported a crash happening while lots of non-blocking requests are processed with Redis in cluster mode and kindly provided valgrind output:
```
==115189== Invalid write of size 8
==115189…
lasch updated
3 years ago
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Hey there,
I have a problem for mc.pl.analyze_clean_genes().
I run it fine in JupyterNotebook, and also fine if do 'python test_meta.py'. Test_meta.py is basically Metacells_Vignette script.
…
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## Check Documentation
I have checked the following places for your error:
- [x] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [x] [nf-core/mag pipeline docum…