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I am getting a file not found error when attempting to install the genomes and aligners:
This is my upgrade command:
bcbio_nextgen.py upgrade -u skip --genomes GRCh37 --genomes hg38 --aligners bwa…
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@Jegelewicz @campmlc @dustymc
I am trying to link MVZ:Bird:191951 to its genome sequence.
The full specifications and sequence are available at https://vgp.github.io/genomeark/Chiroxiphia_lanc…
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Dear, laczkol
Can mitochondrial dna be extracted from the raw sdRAD dataset using RADOrgMiner?
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Example:
```
medtr.jemalong_A17.gnm5.MtrunA17CP EuGene gene 1 977 . + . ID=medtr.jemalong_A17.gnm5.ann1_6.gene:MtrunA17CPg0492171;Name=MtrunA17CPg0492171;locus_tag=MtrunA17_CPg0492171
```
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In testing #351 in order to re-run an analysis from last year (August 2020) with the existing ``nucmer_output/`` folder, and different subsets, a small test case finished fairly quickly. A large subse…
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This marks the beginning of the changeling rework to add it back into the game. First, let's talk design.
To figure out how to design a good antagonist, we need to first break down a bad antagonist…
ghost updated
2 years ago
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Hi Kirill,
would it be possible to add NAF to bioconda?
(I guess it would be highly used by the community after a while, for example in pipelines)
Best regards,
Diogo
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Based on weird things observed in #38 I tried running a negative control - where families were assembled by associating random proteins together then running snekmer. This negative control was positiv…
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I am attempting to run the example script (https://github.com/raphael-group/hatchet/blob/master/script/runHATCHet.sh) on pig data. In the deBAF step, I am getting the error: `The given reference canno…
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Hello,
Thanks for creating this very useful tool.
I was expecting to get the spectra-cn reads only plot like figure 1a in your paper but I can't find it in my output folder.
For your convenience, I…