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Hello:
I wanted to download some SRA file with fastq-dump.
When running the command
`fastq-dump --split-files SRR7062492`
I receive the following error:
```
2018-07-04T08:45:49 fastq-dump.2.…
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What I want to do is
1) search SRA, find all deposited RNAseq for an organism of interest and extract SRA experiment, study, run etc
2) link to BioSample and extract the sample attributes (tissue,…
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### Data Owner Name
DNAstack terms of use,Creative Commons Attribution 4.0 International,CC BY-4.0
### Data Owner Country/Region
United States
### Data Owner Industry
Life Science / Healthcare
#…
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Got a unicode error while iterating a large fastq. Seems to reproduce on any large fastq.
```bash
Traceback (most recent call last):
File "", line 1, in
File "", line 1, in
UnicodeDecodeE…
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Good evening, I have been trying to download the original files for GSE222078 for now three weeks. The original files are necessary as the SRA Normalized Format files are useless for downstream analys…
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Hi, I'm trying to download a certain WGS fastq from accession id SRR3133265. after prefetch the sra file. fasterq-dump gave me these errors:
`2022-02-19T15:48:54 fasterq-dump.2.11.3 err: row #321235…
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### Description of the bug
Hi, I run the pipeline with profile test but it shows the error as follows:
```
Command error:
[ERROR] Please provide a valid value for --ena_metadata_fields!
Pro…
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https://mp.weixin.qq.com/s/WI8u__rXxMdXiX9daItInQ
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Hi,
I have noticed some inconsistencies in the metadata files:
1. sample_name "72D17" is duplicated in both NCBI_code_name2sample_name.csv and P3_plate_map.csv
2. NCBI_sample_code is missing for …
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when I use prefetch, I get the following;
prefetch.3.0.1 SRR2243900
2022-12-08T13:49:10 prefetch.3.0.1: Current preference is set to retrieve SRA Normalized Format files with full base quality …