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> Tifffile v2023.3.15 includes a new parser for MMStack series and reverts the MicroManager specific optimizations for OME series. Positions are now returned as a dimension in the series…
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Cross-platform CI workflow on `main` was added in #107 for macOS and Windows in addition to existing Ubuntu PR tests. Windows tests are failing: https://github.com/czbiohub/iohub/actions/runs/47017357…
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**Describe the bug**
This is from the origin/main branch (latest version as of this post). The error is as described in the image below. Running help(ark.utils) to list the packages within ark.utils …
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The input to bioformats2raw is a large ( >500MB) PNG file. It is stored as a 4-channel RBGA image. The alpha channel is empty and contains all zeros, and take extra time and space to convert.
Is t…
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I'm working with a dataset that was originally in slidebook format but was exported as an ome-tiff series. This gave the following alleged OME XML:
https://gist.github.com/jni/c4b09934715246c158397…
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It would be great if the library supported reading ome-zarr files in addition to ome-tiff files. Thanks.
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Hi VALIS developers,
Thanks for the great package. I have a specific situation that I'd like to get your guidance on.
I have one H&E image and a stack of IF images that have been aligned already…
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Hi,
When i was running example 1, it worked well. The example 1 data contains 3 cycles, 4 channels for each cycle. There are 24 images in ome.tiff file for each cycle, which equals to 4 channels * …
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See https://forum.image.sc/t/no-access-to-some-images-in-omero-securityviolation-metadata-companion-ome-accesses-data-outside-managed-repository/69453
The issue can be reproduced either using the p…
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*Please refer to our [FAQ](https://ark-analysis.readthedocs.io/en/latest/_rtd/faq.html) and look at our [known issues](https://github.com/angelolab/ark-analysis/issues) before opening a bug report.*
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