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I wanted to propose an edit to a snakemake docs page, and so I clicked on the Github icon at the bottom right (many themes have a link to "edit this page" in the docs.
I was very surprised to end u…
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Person 1 has initiated the first run of the workflow. The Nbconvert (Jupyter Notebook) template has S permissions for/from it. Others who start the workflow cannot use this template, and the error bel…
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Hi!
I am trying to use the pipeline with the default command: snakemake all --config input_fastq=/path/.fastq reference_fasta=/path/ref.fasta threads=16 --cores 4
(I got told to add the cores on…
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Hi -
Thank you for developing these packages. I have been successful running my data in CELLECT with the precomputed CELLEX datasets. The results look great. However, I have run into issues wit…
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It would be nice to be able to specify a similar header in the jupyter notebook as in R. wBuild would then parse this configuration and run the notebook. The notebook can be parametrized and executed …
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I ran rattle correct on my input files through snakemake. I get an error message saying this:
Error in rule cluster_correction:
jobid: 13
input: data/.../.../samplefile.fastq
output…
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**Snakemake version**
This is just in the tutorial in the docs...
**Describe the bug**
I was running through the snakemake tutorial in:
`snakemake/docs/tutorial/setup.rst`
And the command i…
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I am just starting out trying to use snakemake to run on our slurm cluster. Based on [this snakemake documentation](https://snakemake.readthedocs.io/en/stable/executing/cluster.html#advanced-resource…
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I'm trying to import the dump from enwiki-20221001
```
+----------+--------------------+
| page_id | page_title |
+----------+--------------------+
| 71701640 | 104-2,3,(6),(7),11 |
+…
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Greetings
I have started trying to use UltraQuant, but since I have never worked with snakemake, and barely with mono and docker, I have encountered some problems that I haven't been able to solve.…