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I have been reading the mzPAF format to build a parser and allow my rustyms to export mzPAF and I have the following suggestions:
- 4.4.1 Allow satellite ions as well (`dvw`) these should be handled …
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Dear developer,
pred_aa_seqs = saprot_if_model.predict(masked_aa_seq, masked_struc_seq, method=method, num_samples=num_samples)
when num_samples was set to 10, it gave 10 identical sequences. Coul…
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I was looking at this with @Antonialock, and we both thought the display is a bit confusing for propeptide.
The "blocks" should be part of the protein remaining (maybe the excised parts could be …
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Thank you for releasing updates, I really appreciate it. By the way, I've noticed that the latest release of CE-Symm (version 2.2.2 from February 2022) is having issues retrieving a structure from the…
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It appears that #1712 was reverted, requiring values to be true and false despite the truevalue/falsevalue of the controlling boolean param. The logic that controls if a variable should be included i…
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I see the output of fasta checking:
BlueWhale_ADGRG2
HybridCattle_ADGRG2
WildYak_ADGRG2
BelugaWhale_ADGRG2
LongFinnedPilotWhale_ADGRG2
WhiteSidedDolphin_ADGRG2
YangtzeRiverDolphin_ADGRG2
Nar…
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Hi,
I am having an issue with the extraction of the RD and AD genotype tags in my input VCF file to the 'gt_ref_depths' and 'gt_alt_depths' columns of my gemini database. I am using gemini (v0.8.0) o…
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#### Current behavior:
22 genes are discovered to be uncorrelated with their corresponding reactions in `Leukotriene metabolism`.
| Gene | UniProtID | Reaction| GPR| Correlation| Manually …
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Hi,
Not sure if there's already an ongoing discussion on this.
GO differentiates between
GO:0008152 metabolic process (The chemical reactions and pathways, including anabolism and catabolism, by wh…
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Thank you for your great work.
When I followed the method in the [previous issue](https://github.com/DeepGraphLearning/GearNet/issues/23) to implement feature extraction for pdb files, I encountered…