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Hi,
I've been trying to install compleasm but when I try to analyze the example output from miniprot I get an error. I've tried both the manual install and the docker/singularity version.
I gues…
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Document the process Reads-Kraken-Extraction-Assembly-CARD
[Resistance documentation readme](https://github.com/ccm-bioinfo/cambda2023/blob/main/Resistencia/readmeReadsKrakenAssemblyBLAST.md)
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The fastq files from NovaSeq are now named in the following way:
```_____001.fastq.gz```
Sample name = the customers name of the sample.
I suggest that we change the naming to the following:
```__…
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**Are you using the latest release?**
Currently in 1.8.11
**Describe the bug**
`funannotate annotate` doesn't parse the COG annotations into the gbk file output if the input is a gbk file, but it…
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2023-04-24T02:13:01 fasterq-dump.2.11.2 err: extract_acc2( '/home/bioinfo/sunyy/work/CRC/WGS/IT_SRP136711/sra/SRR6915139' ).VFSManagerMake() -> RC(rcFS,rcDirectory,rcAccessing,rcNoObj,rcUnknown)
2023…
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Dear colleagues,
Due to limited disk space I tried to install mataphor in a new device. However, the error bellow occurred after typing command line " metaphor test". For your information, at this st…
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Hi,
I was running SqueezeMeta in coassemly mode with the following command:
home/bioinfo/anaconda3/envs/SqueezeMeta/bin/SqueezeMeta.pl -m coassembly -p metagenom_run_final -s /media/bioinfo/hdd2/fin…
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Hello,
There is something I don't understand : why with RNAseq only I got lot of predicted genes with introns whereas when I add protein from other species from the same supergroup or even from eu…
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Hi all,
I am trying to run eggnog and add the eggnog annotation to an existing .gff output from prokka. When I run the command, it looks like the program cannot recognize the .gff file. How do I fix …