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Hi,
I am creating a Galaxy wrapper for SemiBin ([current work](https://github.com/bebatut/tools-iuc/tree/semibin/tools/semibin)).
Thanks for having small test data there. It is so helpful to tes…
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Hey I've seen that you already started to allow running mmseqs outside of SemiBin.
Do you think there could be an efficient way to annotate a large set of samples with taxonomy by first creating a…
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I'm trying to integrate this into some pipelines at JCVI and I have to make a lot of post hoc "helper scripts" to do some post-processing.
I wanted to run a few minor feature requests by you:
1. C…
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Hello,
I woould like to run localcolabfold on a cluster which compute nodes does not have internet access.
problem is one of the first step is to try to download pickled msa info from https://…
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Hi there,
Just recently I am trying [Colabfold web ](https://colab.research.google.com/github/sokrypton/ColabFold/blob/main/AlphaFold2.ipynb#scrollTo=G4yBrceuFbf3)and `colabfold_batch` command lin…
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Hello
When I run the mmseqs command i got the error
Error in if (grepl("AVX2", system("sysctl -a | grep 'AVX2'", intern = T))) { :
argument is of length zero
In addition: Warning message:
…
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Hello,
After conda installing the latest version of eggnog I get this error when calling diamond:
`Error running diamond: Error: Invalid output field: scovhsp`
The diamond version installed b…
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## Expected Behavior
I'm currently trying to align a database with 23391 structures against a dabase of CATH s35 PDB files in an all vs all fashion.
## Current Behavior
Segmentation fault at li…
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Hi all, I'm having a similar issue that hasn't been resolved. I've tried running DRAM-setup.py twice with this batch command:
```
#!/bin/bash
##### Constructed by HPC everywhere #####
#SBATCH -…
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Hello. I am totally appreciative with all the efforts poured in creating this AAI tool. Well done.
I have just some issue with the second step, the calculation of AAI. I have successfully extracted…