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Many of the imported files start with loading the cluster configuration from the `.toml` file:
```python
from ..utils import load_mle_toolbox_config
# Import cluster credentials/settings - SGE or…
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nextflow version 20.07.1.5412
I have a nextflow pipeline that works when run on my work servers directly, but I am trying to get it working with qsub as that is the preferred way of doing things he…
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Hello,
First thanks for your tool! We are using CANU for ont read correction. After few test, we want to apply correction on all of our reads, for all of our samples. The computing time is strongly…
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hi, I'm running v2.0 of AnnotSV on a SGE cluster. There are many lines containing only "full" in my output, but I don't know how to deal with it.
![image](https://user-images.githubusercontent.com/62…
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- AWS ParallelCluster version [e.g. 2.9.0]: 2.7.0
- Cluster config:
```
[global]
update_check = true
sanity_check = false
cluster_template = master-pull-requests-green
[cluster master-pull…
keien updated
3 years ago
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**Issue**
In sync mode working in SGE, secondary analysis creates new job and submits to cluster. However this creates a blocking situation if the available open slots are exceeded by existing alig…
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## Short description of the problem
The function `anvi-cluster-contigs` fails after commit 0d4a507.
## anvi'o version
```
anvi-self-test --version
Anvi'o ...................................…
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**Version info**
Version: 1.2.7 (or latest version per bcbio_nextgen_install.py)
OS name:/version: CentOS Linux release 7.8.2003 (Core)
OS environment: HPC cluster
**To Reproduce**
wget command…
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I tried to create a new torque cluster using ParallelCluster using a specific iam role for the new cluster. I was able to create the cluster without specifying "ec2_iam_role = ParallelClusterAdmin" in…
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Currently experiments are scheduled in batches. Once an entire batch is completed, we submit a new batch of experiments. But some nodes are faster than others. The synchronicity slows us down. Add opt…