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**Describe the bug**
I get this error when I try to do Motif enrichment statistics. I downloaded the dm6 genome using genomepy. I dont understand what is causing the problem.
A quick question rega…
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* pvactools version: 2.0.2
* Python version: 3.6.12
* Operating System: CENTOS
* VEP version: 103
[2440_somatic.vcf.gz](https://github.com/griffithlab/pVACtools/files/6996945/2440_somatic.vcf.gz)
…
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Hi!
I was trying to re-do the Bacteria.hmm (there are over 24,000 genomes!) but I couldn't find the `bit-simplify-fasta-headers` that is needed in `unzip_rename_cat_genes.sh` in your `bioinf_tools`. …
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Hi,
When I run `hisat2-build -p 4 ${genome_file} ${index_file}`
the index builds fine.
However, when I use the **same inputs** but run:
`hisat2-build -p 4 --ss ${ss_file} --exon ${exon_file} ${geno…
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Hi,
I was trying to pull an asset but getting error. I have used the below command:
```
refgenie pull hg38/bowtie2_index
```
Here is the last three line of the error:
```
File "/usr/local/b…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/ETHZ-INS/scanMiRApp
Confirm the following by edit…
plger updated
3 years ago
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Hello :)
I have been trying out SVIM for the past days to call SV between a reference genome and 1 sample. I was curious to find out about overlap of structural variants, especially deletions and d…
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Hello, When I use the docker to run msisensor-pro, at the baseline(for tumor only samples), the terminal shows:Program aborted:Same reference genome file should be used in both 'scan' and msi/pro/base…
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Hey,
I am trying to build PgRC on servers I am getting build erros.
First One, I tried to build on system having AMD Opteron(tm) Processor 3380. I am using cmake 3.15.2 in this one. PgRC build g…
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Four times in the code there's a line like
`if head -1 reference.fasta | grep -e 'dDocent' reference.fasta 1>/dev/null; then`
The logic is to take the first line of the reference fasta (head com…