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Hi,
I used your tool and I got this error with the usearch option
`cannot stat sample_output/Test_proteins.faa.scg: No such file or directory`
I investigated as it was working before and real…
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Hi,
I try to download all viral reference genomes in refseq like so:
```
ncbi-genome-download --format fasta --section refseq --verbose --parallel 10 --human-readable viral
```
The program …
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Issue as posted on stackoverflow:
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I have a snakemake workflow for a metagenomics project. At a point in the workflow, I map DNA sequencing reads (eithe…
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I installed all dependencies and I still obtain "Error" with the default command line and I'm running out of ideas.
Thanks in advance for the help.
2019-04-14 15:02:58 INFO: [GenomePreparation 1…
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I work with both cyanobacterial blooms and human scalps, and in both cases the "diseased" condition has reduced diversity but many more strains of the same species.
Assembling samples separately s…
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Hi,
I assembled metagenomic data from pacbio sequel but splitReads failed.
This is the command of my assemble.
`canu -trim-assemble -p KG-V-spike1-GF.rm_ctrl_hg.1200k.correctedReads.split.th10 …
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Hi,
I'm running MMseq2s to clusterize a huge set of fasta sequences (near 640000). I run the easy-cluster procedure (mmseqs easy-cluster scaffold.fa clustered tmp) but in some point the follow mes…
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Hi, I am new to the metagenomics analysis. I am using the canu for the first time. I am working on a department server. I have attached the command and the error in a file. As I am new it would be nic…
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hello,
I have picrust2-2.1.4-b, Python 3.6.7
Error running this command 1:
picrust2_pipeline.py -s sequences.fasta -i table.biom -o picrust2_out_pipeline -p 1
"FileNotFoundError: [Errno 2] No…
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Hi, I am trying to assembly virus genome (max length 10000 bp) but flye keeps reporting no overlaps found. Could you please help me?
Log file:
[2019-05-24 14:51:08] root: INFO: Starting Flye 2.4.2…