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For privacy and IP reasons, I was wondering if any information was uploaded to NCBI when running locally with the `-n` flag? I am working with private genomes.
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Hi,
- pb-assembly now outputs a very useful PAF file with the placement of haplotigs relative to the primary contigs after Unzipping.
> New! Placement Files -haplotig placement (PAF format) gene…
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Given the recent discussion in #213, #272, #282 and other issues/PRs, would it be helpful if we would formalize the relations between the following `x-airr` fields?
* `miairr`
* `required`
* `nulla…
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Hello, When I run `Drop-seq_tools-2.3.0/TagBamWithReadSequenceExtended \ INPUT="/home/yxtu/result/ubam/shiels_Rep_1.ubam" OUTPUT=/home/yxtu/result/taggedbam//shiels_Rep_1_unaligned_tagged_Cell.bam \ S…
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Require the user to supply a mapping table as in the link below. Having the mapping allows auto-generation of the submission xml for any template on the fly. This also requires a physical layer fo…
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**Proposed Domain**
Bioinformatics
**Content Summary**
I don't know if this would go in the existing [page](http://sciwiki.fredhutch.org/generation/human_shareDeposits/) about data sharing, b…
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Using Funannotate version 1.5.1
I continue to get this warning in my BUSCO logs when I try to run Funannotate.
INFO ****** Phase 1 of 2, initial predictions ******
INFO ****** Step 1/3, curren…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/eduardoillueca/org.Mxanthus.db
Confirm the follow…
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**Submitting author:** @rvosa (Rutger Vos)
**Repository:** https://github.com/naturalis/wgs2ncbi
**Version:** v1.0.0
**Editor:** @lpantano
**Reviewers:** @druvus
**Author instructions**
Thanks for …
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MISO looks very useful for the management of my lab's sequencing workflow, but additional functionality that allowed it to serve as a biosample database would really make it more useful for scientists…