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Update style for the org profile component to match the organisation profiile tab
https://www.figma.com/file/qdd55HyIgTj4WHHG9dSUBF/Mendisphere?type=design&node-id=1508-19508&mode=design&t=2miL2tMpHC…
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Hi, thanks for providing this code! Could you please give more information (e.g. a brief explanation) of the following options?
- max_align=5
- top_k=3
- win=5
- skip=-0.1
- margin=True
- len_pe…
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Does STAR output alignments that read1 is mapped to a chromosome and read2 mapped to the other chromsome ?
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I have just used cactus minigraph to align 10 ~ 1.1 Gb genomes with the commands:
```
cactus-minigraph \
./jobstore \
../genome_seq_file.txt \
${prefix}.sv.gfa \
--reference $r…
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Hi,
I ran the indexer using the following command:
```
docker run -u $(id -u ${USER}):$(id -g ${USER})
-v /home/rstudio/data/a2i/final_bams:/data/aln:ro
-v /home/rstudio/data/a2i/res1:/data/…
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```
But a general approach for complex superposition? Without alignments given:
first do all-against-all superposition within one complex to get symmetry
classes
then to the same for the other co…
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Hi Alex,
Is there a way to know the total number of lines in the BAM file from any of the STAR outputs? The log outputs the total number of multimapped reads, but not how many alignments there are.…
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This warning is produced by `validate` even if the SEQ is set to `*`. The SAM spec explicitly states that it is ok for the SEQ to be `*` and that the lengths don't have to match:
> If not a ‘*’, the …
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Primary interest: HiFi reads
Requested output by Pille:
`read depth, both with and without secondary alignments`
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Hi,
First of all, thanks for this amazing tool. Not only, it is fast but is structured so well that it is a joy to use.
This is from your comment in anchorwave repo. I have multiple pairwise MA…