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TODO list:
- [ ] Convert tissueId from the URL from `_` to `:`
- [ ] Update selecting organ state to trigger route change to new URL, so URL becomes the tissueId source of truth
- [ ] Make sure /cell…
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I have 10X Visium data for a spatial transcriptomics project.
Although I'm able to use the spatial coordinates for the cellxgene embedding, I'm not able to put the image on it to co-zoom with the spo…
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There are a handful of datasets in the census that expose numerical precision issues with the use of float32 data types for the `obs` axis summary stats.
For example, `obs.raw_sum` is currently a f…
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We are recently seeing a new error logged by the builder:
> 2023-07-05 22:27:59 369254 ERROR Dataset id 4ed927e9-c099-49af-b8ce-a2652d069333 has more than one H5AD asset - ignoring this dataset…
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### Overview
**Tool**: Gene Expression
- Feature: Marker Genes Panel
**Description**: We'd like to track if Gene Expression is driving traffic to CellGuide to see the overlap in use between our pro…
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# Design
## `uns` (Dataset Metadata)
`uns` is a ordered dictionary with a `str` key.
...
When a dataset is uploaded, CELLxGENE Discover MUST automatically add the `schema_version` key and …
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# Design
## `uns` (Dataset Metadata)
`uns` is a ordered dictionary with a `str` key. Curators MAY annotate the following keys and values in `uns`:
### {category}_colors
Key
…
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### Request type
Extension of existing module
### Request description
The [`gget_cellxgene`](https://github.com/pachterlab/gget/blob/dev/gget/gget_cellxgene.py) module could support additional filt…
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The H5AD staging (download) code has a number of rare errors that we should protect against, on the expectation that they are transient:
* an occasional 400 / 403 error on the presigned URL GET
* (s…
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Partner with EBI to update and expand the Human Ancestry Ontology (HANCESTRO). This ontology is used by CZ CELLxGENE but has many gaps. SCB Ancestry and Pediatrics Networks will generate new data that…